Tool: cBioPortal

Page image

At a glance

Field	Details
Tool name	cBioPortal
Purpose and core functionality	cBioPortal simplifies access to complex cancer genomic data through visualisation and intuitive exploration. It enables researchers and clinicians to interpret multimodal datasets, extract biological insights and support clinical decisions.
Type	Analysis
Life cycle phases	Process, analyse, Share
Domains using it	Oncology
Website	Website Health-RI Service Health-RI hosted instance
Resource URLs	Manual: User guide Metadata and data standards: Supported data types Supporting assets: GENIE data: Large multi-institutional cancer dataset compatible with cBioPortal Specific documentation: Documentation includes development, deployment and usage documentation Support: Health-RI support: First-line and second-line support for Dutch users
Integrations with other tools	Slide Score: Enables slide viewer embedding within cBioPortal interface as described here XNAT using xnat2cbio and following the EOSC4Cancer manual xOpat following the EOSC4Cancer manual cBioPortal can easily link to other tools, although the tools must support the appropriate security measures.

Known gaps or user needs

Type	Description	URL
Gap	Clinical data harmonisation guidance: Researchers need support aligning clinical data elements to make them compatible with other datasets.
Gap	Low awareness of cBioPortal.

Compatible with

Tool

Slide Score

Domains: Oncology

Phases: Analyse Preserve Process Share

Tool

Domains: Oncology

Phases: Analyse Preserve Process Reuse Share